# make html-version of this manual with:
# rmarkdown::render("5_alignment_moon.R")
# ====================================
# load libraries
library(qlcVisualize)
library(qlcData)
library(maptools)
# load ad-hoc functions
source("../../code/mappingAlignments.R")
# load doculects
places <- read.delim("../../data/places.tsv", quote = "")
# load voronoi diagram
load("../../data/voronoi.Rdata")
# ====================================
# show cognate sets of 'split' version
plot_cognates("../data/5_aligned_split.tsv")
# show corrected data of alignment
# with speculative *MVNSVC reconstruction
data <- "../data/5_aligned_lump.tsv"
plot_cognates(data)
# ====================================
# N in mond
plot_column(get_column(data, 2, 3))
title("Correspondences of 'N' in 'mond'")
# the 'n' in polish should probably be linked to this one, via metathesis
# MONS > MESON
N1 <- get_column(data,2,3)
N2 <- get_column(data,2,8)
N <- merge_columns(N1, N2)
plot_column(N)
title("Correspondences of 'N' in 'mond'")
# S in mond
plot_column(get_column(data, 2, 5))
title("Correspondences of 'S' in 'mond'")
# T/C in mond
plot_column(get_column(data, 2, 9))
title("Correspondences of T in 'mond'")
# =========
# Vowels
plot_column(get_column(data, 2, 2))
title("Correspondences of first vowel")
plot_column(get_column(data, 2, 4))
title("Correspondences of second vowel")
plot_column(get_column(data, 2, 7))
title("Correspondences of third vowel")
# =========
# L in lune
plot_column(get_column(data, 5, 1))
title("Correspondences of 'L' in 'lune'")
# U in lune
plot_column(get_column(data, 5, 2))
title("Correspondences of 'U' in 'lune'")
# E in lune
plot_column(get_column(data, 5, 4))
title("Correspondences of 'E' in 'lune'")
# =========
# show Session Info
sessionInfo()
## R version 3.2.3 (2015-12-10)
## Platform: x86_64-apple-darwin13.4.0 (64-bit)
## Running under: OS X 10.11.5 (El Capitan)
##
## locale:
## [1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8
##
## attached base packages:
## [1] stats graphics grDevices utils datasets methods base
##
## other attached packages:
## [1] maptools_0.8-37 sp_1.2-1 qlcData_0.1.0
## [4] qlcVisualize_0.1.0
##
## loaded via a namespace (and not attached):
## [1] gtools_3.5.0 spam_1.3-0 slam_0.1-32
## [4] lattice_0.20-33 colorspace_1.2-6 mapplots_1.5
## [7] htmltools_0.3 yaml_2.1.13 mgcv_1.8-10
## [10] alphahull_2.0 spatstat_1.44-1 foreign_0.8-66
## [13] registry_0.3 sgeostat_1.0-26 foreach_1.4.3
## [16] plyr_1.8.3 stringr_1.0.0 fields_8.3-6
## [19] munsell_0.4.2 gtable_0.1.2 raster_2.5-2
## [22] caTools_1.17.1 evaluate_0.8 codetools_0.2-14
## [25] knitr_1.12 httpuv_1.3.3 seriation_1.1-3
## [28] Rcpp_0.12.3 xtable_1.8-0 KernSmooth_2.23-15
## [31] tensor_1.5 formatR_1.2.1 scales_0.3.0
## [34] gdata_2.17.0 abind_1.4-3 mime_0.4
## [37] deldir_0.1-9 mapdata_2.2-6 gplots_2.17.0
## [40] tripack_1.3-7 ggplot2_2.0.0 digest_0.6.9
## [43] stringi_1.0-1 gclus_1.3.1 qlcMatrix_0.9.5
## [46] shiny_0.13.0 splancs_2.01-38 polyclip_1.3-2
## [49] grid_3.2.3 tools_3.2.3 bitops_1.0-6
## [52] magrittr_1.5 maps_3.0.2 goftest_1.0-3
## [55] cluster_2.0.3 docopt_0.4.5 MASS_7.3-45
## [58] Matrix_1.2-3 rmarkdown_0.9.2 iterators_1.0.8
## [61] R6_2.1.1 TSP_1.1-3 nlme_3.1-122